- Introduction
- Getting Started
- 1. Installation & First Steps
- 2. Coming from R or Python
- Language Fundamentals
- 3. Bio Literals & Sequences
- 4. Variables, Types & Records
- 5. Collections & Tables
- 6. Pipes & Transforms
- 7. Functions & Closures
- 8. Control Flow
- 9. Error Handling
- Working with Biology
- 10. File I/O
- 11. Genomic Intervals & Variants
- Building Workflows
- 12. Pipelines
- 13. nf-core Integration
- 14. BioContainers
- 15. BL Convert: Files & External Tools
- 16. Galaxy ToolShed & Workflow Parsing
- 17. Statistics & Linear Algebra
- 18. Omics Packages
- 19. Bio APIs
- 20. Streams & Scale
- 21. SQLite & Notifications
- 22. Knowledge Graphs
- 23. PDB & Enrichment
- Extending BioLang
- 24. Literate Notebooks
- 25. Plugins & Extending
- 26. Packages, Migration & CLI Tooling
- Performance
- 27. Benchmarks & Correctness
- Appendix
- 28. Builtin Reference
- 29. Operator Reference