- Introduction
- Getting Started
- 1. Installation & First Steps
- Language Fundamentals
- 2. Bio Literals & Sequences
- 3. Variables, Types & Records
- 4. Collections & Tables
- 5. Pipes & Transforms
- 6. Functions & Closures
- 7. Control Flow
- 8. Error Handling
- Working with Biology
- 9. File I/O
- 10. Genomic Intervals & Variants
- Building Workflows
- 11. Pipelines
- 12. nf-core Integration
- 13. BioContainers
- 14. Galaxy ToolShed & Workflow Parsing
- 15. Statistics & Linear Algebra
- 16. Bio APIs
- 17. Streams & Scale
- 18. SQLite & Notifications
- 19. Knowledge Graphs
- 20. PDB & Enrichment
- Extending BioLang
- 21. Literate Notebooks
- 22. Plugins & Extending
- Performance
- 23. Benchmarks & Correctness
- Appendix
- 24. Builtin Reference
- 25. Operator Reference