BioLang Workflows
Runnable analyses, real-data notebooks, practical books, courses, benchmarks, and independent reference validation are maintained in a dedicated repository. BioLang itself stays focused on the compiler, runtime, CLI, and scientific packages.
Runnable examples
Small examples organized by language basics, data work, APIs, visualization, and research domains.
Complete analyses
End-to-end scripts and notebooks, including the real-data single-cell workflows.
Books
Practical bioinformatics, approachable biostatistics, MSMB, and single-cell learning material.
Courses
The HBC single-cell adaptation and its measured validation companion.
Independent validation
Black-box comparisons with R, Seurat, SCTransform, Python, and Scanpy kept outside BioLang.
Benchmarks
Reproducible timing and memory definitions without generated measurements in the language repository.
Run an example locally
Install BioLang, clone the workflow repository, and run the quickstart:
git clone https://github.com/oriclabs/biolang-workflows.git
cd biolang-workflows
bl run examples/quickstart.blWorkflows that import scientific packages include their additional setup in the repository README.
Where should I look?
| Need | Repository |
|---|---|
| Compiler, CLI, packages, or API reference | BioLang |
| A runnable analysis, notebook, book, or course | BioLang Workflows |
| Reference comparisons or performance measurements | Validation and benchmarks |