Rosalind — Bioinformatics Armory

The Rosalind Bioinformatics Armory, all 15 problems: 14 solved and one partial. See the problem list.

15 problems — 14 solved, 1 partial. 13 carry assertions that run on every commit; 3 need a network connection and are checked separately.

Problem statements © rosalind.info — paraphrased, not reproduced. Titles, published sample datasets and expected answers are reproduced only as far as verification needs them. Every problem links to its rosalind.info page.

The solutions themselves are not published here. Rosalind asks that solutions not be posted outside their site, and this page cites Rosalind as an independent check on BioLang, so it reports what was verified rather than showing the code. Every problem below links to its own page on rosalind.info.

Sections

Or read every problem on a single page — heavier to load, but one place to scroll, search and print.

Every problem

Problem Title Status Section Checked
INI Introduction to the Bioinformatics Armory solved Sequence verified by bl test
GBK GenBank Introduction solved Databases needs NCBI
FRMT Data Formats solved Databases needs NCBI
MEME New Motif Discovery partial Motifs verified by bl test
NEED Pairwise Global Alignment solved Alignment verified by bl test
TFSQ FASTQ format introduction solved Fastq verified by bl test
PHRE Read Quality Distribution solved Fastq verified by bl test
PTRA Protein Translation solved Translation verified by bl test
FILT Read Filtration by Quality solved Fastq verified by bl test
RVCO Complementing a Strand of DNA solved Sequence verified by bl test
SUBO Suboptimal Local Alignment solved Alignment verified by bl test
BPHR Base Quality Distribution solved Fastq verified by bl test
CLUS Global Multiple Alignment solved Alignment verified by bl test
ORFR Finding Genes with ORFs solved Orf verified by bl test
BFIL Base Filtration by Quality solved Fastq verified by bl test