Rosalind — Bioinformatics Armory
The Rosalind Bioinformatics Armory, all 15 problems: 14 solved and one partial. See the problem list.
15 problems — 14 solved, 1 partial. 13 carry assertions that run on every commit; 3 need a network connection and are checked separately. Press Run on any block to execute it in your browser, or open the whole pack in the workbench.
Take it with you:
download this page as a notebook
(.bln — run it with bl notebook, or export it to HTML, PDF or Jupyter),
every problem as a zip,
or grab a single problem with the Download .bl link in its section.
Sections
Or read every problem on a single page — heavier to load, but one place to scroll, search and print.
Sequence
2 problems — 2 solved
INI, RVCO
Databases
2 problems — 2 solved
GBK, FRMT
Motifs
1 problem — 0 solved
MEME
Alignment
3 problems — 3 solved
NEED, SUBO, CLUS
Fastq
5 problems — 5 solved
TFSQ, PHRE, FILT, BPHR, BFIL
Translation
1 problem — 1 solved
PTRA
Orf
1 problem — 1 solved
ORFR
Every problem
| Problem | Title | Status | Section | Runs in | Checked |
|---|---|---|---|---|---|
| INI | Introduction to the Bioinformatics Armory | solved | Sequence | browser + CLI | verified by bl test |
| GBK | GenBank Introduction | solved | Databases | browser + CLI — online | needs NCBI |
| FRMT | Data Formats | solved | Databases | browser + CLI — online | needs NCBI |
| MEME | New Motif Discovery | partial | Motifs | browser + CLI | verified by bl test |
| NEED | Pairwise Global Alignment | solved | Alignment | browser + CLI — online | verified by bl test |
| TFSQ | FASTQ format introduction | solved | Fastq | browser + CLI | verified by bl test |
| PHRE | Read Quality Distribution | solved | Fastq | browser + CLI | verified by bl test |
| PTRA | Protein Translation | solved | Translation | browser + CLI | verified by bl test |
| FILT | Read Filtration by Quality | solved | Fastq | browser + CLI | verified by bl test |
| RVCO | Complementing a Strand of DNA | solved | Sequence | browser + CLI | verified by bl test |
| SUBO | Suboptimal Local Alignment | solved | Alignment | browser + CLI | verified by bl test |
| BPHR | Base Quality Distribution | solved | Fastq | browser + CLI | verified by bl test |
| CLUS | Global Multiple Alignment | solved | Alignment | browser + CLI | verified by bl test |
| ORFR | Finding Genes with ORFs | solved | Orf | browser + CLI | verified by bl test |
| BFIL | Base Filtration by Quality | solved | Fastq | browser + CLI | verified by bl test |