Rosalind — Bioinformatics Armory
The Rosalind Bioinformatics Armory, all 15 problems: 14 solved and one partial. See the problem list.
15 problems — 14 solved, 1 partial. 13 carry assertions that run on every commit; 3 need a network connection and are checked separately.
Problem statements © rosalind.info — paraphrased, not reproduced. Titles, published sample datasets and expected answers are reproduced only as far as verification needs them. Every problem links to its rosalind.info page.
The solutions themselves are not published here. Rosalind asks that solutions not be posted outside their site, and this page cites Rosalind as an independent check on BioLang, so it reports what was verified rather than showing the code. Every problem below links to its own page on rosalind.info.
Sections
Or read every problem on a single page — heavier to load, but one place to scroll, search and print.
Sequence
2 problems — 2 solved
INI, RVCO
Databases
2 problems — 2 solved
GBK, FRMT
Motifs
1 problem — 0 solved
MEME
Alignment
3 problems — 3 solved
NEED, SUBO, CLUS
Fastq
5 problems — 5 solved
TFSQ, PHRE, FILT, BPHR, BFIL
Translation
1 problem — 1 solved
PTRA
Orf
1 problem — 1 solved
ORFR
Every problem
| Problem | Title | Status | Section | Checked |
|---|---|---|---|---|
| INI | Introduction to the Bioinformatics Armory | solved | Sequence | verified by bl test |
| GBK | GenBank Introduction | solved | Databases | needs NCBI |
| FRMT | Data Formats | solved | Databases | needs NCBI |
| MEME | New Motif Discovery | partial | Motifs | verified by bl test |
| NEED | Pairwise Global Alignment | solved | Alignment | verified by bl test |
| TFSQ | FASTQ format introduction | solved | Fastq | verified by bl test |
| PHRE | Read Quality Distribution | solved | Fastq | verified by bl test |
| PTRA | Protein Translation | solved | Translation | verified by bl test |
| FILT | Read Filtration by Quality | solved | Fastq | verified by bl test |
| RVCO | Complementing a Strand of DNA | solved | Sequence | verified by bl test |
| SUBO | Suboptimal Local Alignment | solved | Alignment | verified by bl test |
| BPHR | Base Quality Distribution | solved | Fastq | verified by bl test |
| CLUS | Global Multiple Alignment | solved | Alignment | verified by bl test |
| ORFR | Finding Genes with ORFs | solved | Orf | verified by bl test |
| BFIL | Base Filtration by Quality | solved | Fastq | verified by bl test |